PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009797394.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 357aa    MW: 39233.7 Da    PI: 7.1495
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009797394.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.2e-20189238255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  XP_009797394.1 189 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 238
                     59******9.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.26E-34188248No hitNo description
SMARTSM003809.3E-38189252IPR001471AP2/ERF domain
PROSITE profilePS5103223.143189246IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-32189247IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-23189247IPR016177DNA-binding domain
PRINTSPR003673.4E-11190201IPR001471AP2/ERF domain
PfamPF008473.6E-14190238IPR001471AP2/ERF domain
PRINTSPR003673.4E-11212228IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0045595Biological Processregulation of cell differentiation
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MAATTDFWTS TLLDLNSSNS LQGGGELMEA LAPFIKSASP INYPSISPSP FSSFSFPSTN  60
SQSFPITTTT SSTSTSYPYD SFSLTSQPNM SYDGCSTSTT INPTFSQGFL GFEMEQPGSI  120
GLDQLTQAQV HQIQAQIYLQ NNHHQQQIMS SAATFQDSLT HQHNHHASLL SPKPVSMKQS  180
GWPPKPPKLY RGVRQRHWGK WVAEIRLPKN RTRLWLGTFD TAEEAALAYD KAAYKLRGDF  240
ARLNFPHLRH SGSLIGGEFG EYKPLHSSVD AKLQAICQDL AQGKSIDTKK KRKVSSKKEE  300
SKPAEVGSES DGSGSCSGFG SGGSSPISDL TFTEFADEDS IWDMCSEKFM LQKYPSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-22188246160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1288293KKKRKV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00026PBMTransfer from AT1G78080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009797394.10.0PREDICTED: ethylene-responsive transcription factor RAP2-4-like
SwissprotQ8H1E41e-82RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLM1AG111e-130M1AG11_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000220231e-129(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16102471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.17e-59related to AP2 4